Basic Information
Locus ID:
Chr05G013200
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein translocase subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 17689401 | 17690868 | - | Chr05G013200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 103 | 1.42E-23 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 111 | 7.2E-40 | IPR027417 |
| ProSiteProfiles | PS51196 | SecA family profile. | 1 | 156 | 27.42935 | IPR014018 |
| ProSitePatterns | PS01312 | SecA family signature. | 85 | 100 | - | IPR020937 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01800.1 | Albino or Glassy Yellow 1. Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. | 0 |
| RefSeq | XP_029146504.1 | protein translocase subunit SecA, chloroplastic isoform X4 [Arachis hypogaea] | 0 |
| Q41062 | Protein translocase subunit SecA, chloroplastic OS=Pisum sativum OX=3888 GN=SecA PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0RV52 | SECA_MOTOR_DEAD domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG343205 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10458, jg9019 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1077, gene_13408 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024121, Ah031607 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g010050, BVRB_5g122730 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25704, Seu_jg7111 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004576, GOSA_00020180 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11665, Sgl17164, Sgl54639, Sgl59975 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30007280, pistato.v30039110 |
| Apiaceae | Apium graveolens | 3 | Ag11G03939, Ag6G02443, Ag9G02368 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G000270, COCNU_15G003170 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701417, gene-LOC103720122 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G32559, Ftri18G11286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21650.3, AT4G01800.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19170.v2.2, Sp6g01650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g009290.2N, BniB08g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1867, Ceq06G0547 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2007, Cgl06G0567 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g06910, gene.Cymno08g07140 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g16040, gene.Thate05g12950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.547, evm.TU.LG06.839 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016539, Pov_00021694 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22942, Lb6G30841 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524 |
| Poaceae | Oryza coarctata | 3 | Oco01G009280, Oco02G009570, Oco22G003520 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g21820.1, LOC_Os11g08980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G139800, gene-BS78_05G097000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103927, Pt_Chr0603665 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G338700, Tel4E01G158600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb090990_P001, Zm00001eb130760_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27238, nbis-gene-6517 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10242, Zma_g18533 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g13940, gene.Posoc05g18660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10616, nbisL1-mrna-18708 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-103, nbisL1-mrna-5559 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11369, nbisL1-mrna-13125 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.412, evm.TU.utg000006l.609 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011737, Maker00013085 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10163, nbisL1-mrna-8110 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7364, nbisL1-mrna-9803 |
| Salicaceae | Populus euphratica | 2 | populus_peu27429, populus_peu32459 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627149, gene-LOC132644885 |
| Solanaceae | Solanum chilense | 2 | SOLCI001197400, SOLCI003112400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002391, gene-LOC107004481 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17557, gene_866 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2545, TC07G1717 |
| Zosteraceae | Zostera marina | 4 | Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... |