Basic Information
Locus ID:
Chr05G012400
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 15635636 | 15637457 | + | Chr05G012400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 103 | 415 | 7.4E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 68 | 446 | 2.39E-120 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 58 | 447 | 2.3E-115 | IPR012334 |
| SMART | SM00710 | pbh1 | 253 | 274 | 640.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 276 | 297 | 830.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 226 | 252 | 500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 307 | 328 | 16.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 336 | 357 | 6400.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | NP_001150436.2 | polygalacturonase precursor [Zea mays] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9EY08 | Polygalacturonase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology