Basic Information
Locus ID:
Chr05G010770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 10960115 | 10966242 | + | Chr05G010770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 636 | 836 | 3.91746E-109 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 323 | 610 | 3.08708E-96 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1257 | 1477 | 1.27413E-116 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 940 | 1234 | 2.09206E-93 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 943 | 1183 | 1.5E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 327 | 589 | 1.1E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 654 | 788 | 1.8E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1276 | 1424 | 5.3E-27 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 632 | 858 | 4.26E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 928 | 1240 | 5.89E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 312 | 618 | 1.44E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1248 | 1490 | 1.28E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1243 | 1495 | 1.0E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 301 | 617 | 2.7E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 618 | 869 | 1.8E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 901 | 1240 | 4.3E-65 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1285 | 1476 | 2.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 663 | 836 | 3.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 636 | 859 | 23.029318 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1259 | 1493 | 16.366686 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 942 | 1222 | 37.611595 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 322 | 602 | 31.264721 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 761 | 775 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 914 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_020398877.1 | ABC transporter C family member 3 [Zea mays] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804UFN7 | ABC transporter C family member 3 OS=Zea mays OX=4577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology