Basic Information
Locus ID:
Chr05G010680
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 10867498 | 10874410 | - | Chr05G010680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 22 | 50 | 0.00313687 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 383 | 485 | 9.99372E-30 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 200 | 357 | 5.8E-44 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 395 | 465 | 3.3E-9 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 308 | 514 | 4.24E-36 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 52 | 1.2E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 146 | 371 | 3.55E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 373 | 1.1E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 374 | 518 | 2.8E-29 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 11 | 57 | 3.0E-5 | - |
| SMART | SM00456 | ww_5 | 20 | 53 | 1.2E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 195 | 386 | 4.9E-59 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.1126 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 207 | 369 | 30.408705 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 163 | 204 | 8.514112 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 315 | 323 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 137 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_025815286.1 | DEAD-box ATP-dependent RNA helicase 14-like isoform X2 [Panicum hallii] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UCX5 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_31258 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology