Basic Information
Locus ID:
Chr05G008930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 8340948 | 8347643 | - | Chr05G008930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 178 | 484 | 4.32541E-161 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 179 | 483 | 5.0E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 80 | 117 | 1.2E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 78 | 121 | 1.31E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 178 | 485 | 4.32E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 176 | 494 | 9.9E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 67 | 122 | 1.3E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 179 | 486 | 49.716496 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 80 | 117 | 12.337246 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 180 | 195 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 80 | 117 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 919 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_034589899.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Setaria viridis] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TBL9 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_41792 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology