Basic Information
Locus ID:
Chr05G008580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 7874018 | 7880970 | - | Chr05G008580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 110 | 324 | 3.5E-25 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 105 | 366 | 6.92E-42 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 461 | 827 | 9.52E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 462 | 642 | 2.3E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 352 | 442 | 8.7E-16 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 248 | 6.3E-21 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 263 | 351 | 3.0E-5 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 643 | 829 | 1.3E-5 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 605 | 626 | 7.049695 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 201 | 215 | 2.8E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 298 | 312 | 2.8E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 129 | 144 | 2.8E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 601 | 617 | 2.8E-12 | - |
| Coils | Coil | Coil | 33 | 57 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58848.1 | Disease resistance protein (CC-NBS-LRR class) family. | 0 |
| RefSeq | XP_039801367.1 | disease resistance protein RGA5-like isoform X4 [Panicum virgatum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0T6Z8 | NB-ARC domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG251000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology