Basic Information
Locus ID:
Chr05G007250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
IAA15
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 6299615 | 6301131 | + | Chr05G007250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 38 | 186 | 2.0E-48 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 81 | 177 | 1.53E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 77 | 190 | 8.6E-35 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 82 | 178 | 15.632698 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 55 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23050.1 | indole-3-acetic acid 7. Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. | 0 |
| RefSeq | NP_001140514.1 | IAA23-auxin-responsive Aux/IAA family member [Zea mays] | 0 |
| Q69VE0 | Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA23 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T9R9 | Auxin-responsive protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_41439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology