Basic Information
Locus ID:
Chr05G006170
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 5062652 | 5063224 | + | Chr05G006170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 130 | 174 | 7.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 177 | 9.19E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 183 | 3.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 131 | 173 | 1.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 174 | 12.386007 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034591783.1 | RING-H2 finger protein ATL30-like [Setaria viridis] | 0 |
| TrEMBL | A0A5J9TBK8 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42106 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541940, gene-QOZ80_6BG0495130 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G006170 |