Basic Information
Locus ID:
Chr05G006150
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 5052094 | 5053626 | + | Chr05G006150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 176 | 220 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 225 | 1.97E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 226 | 8.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 219 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 220 | 11.840146 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 80 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11360.1 | RING-H2 finger A1B. Encodes a putative RING-H2 finger protein RHA1b. | 0 |
| RefSeq | XP_025812153.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum hallii] | 0 |
| Q5Z5F2 | E3 ubiquitin-protein ligase Os06g0535400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TBG9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.1888, BH06.1729, CH06.1931 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541930, gene-QOZ80_6BG0495120 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709350.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034092, gene-QYE76_034093 |
| Poaceae | Oryza coarctata | 2 | Oco11G010400, Oco12G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G155100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0400154, Pt_Chr0400168, Pt_Chr0400169, Pt_Chr0400176 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G006150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG048530, gene_TRIDC7BG032550 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G347800.1.cds1, TraesCS7B02G235400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10295, nbis-gene-19345 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30652, Zma_g32889 |