Basic Information
Locus ID:
Chr05G006130
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 5040281 | 5041053 | + | Chr05G006130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 154 | 196 | 4.88901E-16 | - |
| Pfam | PF13639 | Ring finger domain | 153 | 196 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 202 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 202 | 7.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 154 | 195 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 196 | 12.371254 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34000.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813027.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum hallii] | 0 |
| TrEMBL | A0A5J9TBK6 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology