Basic Information
Locus ID:
Chr05G006070
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 5005037 | 5014823 | - | Chr05G006070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 132 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 85 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 37 | 0.0048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 134 | 1.41E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 163 | 7.5E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 44 | 85 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 39 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 133 | 3.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 51 | 85 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 7 | 37 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 51 | 85 | 10.408196 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004968630.1 | protein transport protein SEC13 homolog B [Setaria italica] | 0 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J8XKU9 | Protein transport protein SEC13 B OS=Zea mays OX=4577 GN=SEC13B_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology