Basic Information
Locus ID:
Chr05G005930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 4891005 | 4895592 | - | Chr05G005930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 112 | 155 | 9.52675E-20 | - |
| Pfam | PF13639 | Ring finger domain | 112 | 155 | 1.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 161 | 1.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 161 | 9.6E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 154 | 3.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 12.651561 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025819002.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UGI5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_32574 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.210, BH02.219, CH02.274 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0002090, gene-QOZ80_1BG0050550 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0245590.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_018512, gene-QYE76_051213, gene-QYE76_051214 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G004990 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G019700, gene-BS78_03G019800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204999, Pt_Chr0205104 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028210, Chr05G005930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G248600, Tel3E01G249200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG018440, gene_TRIDC3AG018460 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G139900.1.cds1, TraesCS3A02G140000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24351 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9569 |