Basic Information
Locus ID:
Chr05G004840
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 3875907 | 3876953 | + | Chr05G004840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 219 | 261 | 2.06499E-23 | - |
| Pfam | PF13639 | Ring finger domain | 219 | 261 | 6.0E-14 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 9 | 44 | 1.9E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 266 | 3.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 267 | 3.0E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 220 | 260 | 1.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 220 | 261 | 12.651561 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 321 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025814229.1 | E3 ubiquitin-protein ligase SIRP1-like [Panicum hallii] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T064 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_50274 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.1266, BH02.1309, CH02.1423 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0003750, gene-QOZ80_1BG0052160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0257210.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052458 |
| Poaceae | Oryza coarctata | 2 | Oco01G007850, Oco02G008150 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g16950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G119500, gene-BS78_K296600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603750, Pt_Chr0603832 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G027140, Chr03G001130, Chr05G004840, Chr08G004030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G326000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG026290, gene_TRIDC3BG030040 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G189200.1.cds1, TraesCS3B02G218400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128880_P001, Zm00001eb332700_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24474, nbis-gene-32541 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7329, Zma_g9657 |