halophFGD

Basic Information

Locus ID: Chr05G004060

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Protein of unknown function (DUF4101)

Maps and Mapping Data

Chromosome/Scaffold	Start	End	Strand	ID
GWHCBIM00000005	3238656	3240490	-	Chr05G004060

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52047	RNI-like	92	145	1.96E-5	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	78	180	3.5E-7	IPR032675
MobiDBLite	mobidb-lite	consensus disorder prediction	189	208	-	-

KEGG Pathway

KO Term:

K01899 (succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5])

Pathway:

ko00020 (Citrate cycle (TCA cycle)) map00020 (Citrate cycle (TCA cycle)) ko00640 (Propanoate metabolism) map00640 (Propanoate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism)

Module:

M00009 (Citrate cycle (TCA cycle, Krebs cycle)) M00011 (Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate)

Reaction:

R00432 (GTP + Succinate + CoA <=> GDP + Orthophosphate + Succinyl-CoA) R00727 (ITP + Succinate + CoA <=> IDP + Orthophosphate + Succinyl-CoA)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	NP_001141820.1	uncharacterized protein LOC100273961 [Zea mays]	0
TrEMBL	A0A5J9UFS5	F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_32170 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_390
Amaranthaceae	Atriplex hortensis	1	Ah017899
Amaranthaceae	Suaeda glauca	6	Sgl45777, Sgl45778, Sgl45816, Sgl45818, Sgl50520, Sgl50521
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000009555, gene:ENSEOMG00000033591
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0004120, CQ.Regalona.r1.8BG0004410
Arecaceae	Cocos nucifera	1	scaffold004783G000060
Arecaceae	Phoenix dactylifera	1	gene-LOC103696164
Poaceae	Echinochloa crus-galli	8	AH02.859, AH02.861, AH02.959, AH03.1007, BH02.1162 ... BH02.1281, CH02.1284, CH02.1400
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0004910, gene-QOZ80_1AG0004930 ... gene-QOZ80_1AG0004980, gene-QOZ80_1BG0053400, gene-QOZ80_1BG0053450, gene-QOZ80_1BG0053460, gene-QOZ80_1BG0053480, gene-QOZ80_1BG0053490
Poaceae	Lolium multiflorum	4	gene-QYE76_013133, gene-QYE76_052331, gene-QYE76_052332 ... gene-QYE76_052335
Poaceae	Paspalum vaginatum	2	gene-BS78_03G107400, gene-BS78_03G116000
Poaceae	Sporobolus alterniflorus	5	Chr05G001150, Chr05G004060, Chr05G004070, Chr08G019910 ... Chr17G013960
Poaceae	Thinopyrum elongatum	4	Tel3E01G309500, Tel3E01G309800, Tel4E01G363800 ... Tel5E01G902300
Poaceae	Triticum aestivum	4	TraesCS3B02G207000.1, TraesCS3D02G182700.1 ... TraesCS6A02G162800.1, TraesCS6D02G149400.1
Poaceae	Zea mays	3	Zm00001eb127920_P001, Zm00001eb152580_P001 ... Zm00001eb411850_P001
Poaceae	Zoysia japonica	1	nbis-gene-32453
Poaceae	Zoysia macrostachya	1	Zma_g7395
Portulacaceae	Portulaca oleracea	1	evm.TU.LG01.1658