Basic Information
Locus ID:
Chr05G003850
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000005 | 3040706 | 3049999 | - | Chr05G003850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 503 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 896 | 928 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 425 | 461 | 4.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 892 | 1080 | 3.06E-14 | IPR011044 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 448 | 951 | 1.31E-41 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 317 | 503 | 2.56E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 650 | 1.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 717 | 947 | 1.2E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 280 | 516 | 2.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 948 | 1081 | 6.4E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 890 | 929 | 3.8E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.4E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 420 | 461 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 596 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 979 | 1017 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 0.077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 550 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 504 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 803 | 844 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1040 | 1072 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 847 | 887 | 1.3 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 897 | 932 | 9.99469 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.454285 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 462 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 574 | 605 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 897 | 938 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 448 | 462 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1073 | 1097 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_034596563.1 | protein TPR1 isoform X1 [Setaria viridis] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UGW4 | WD_REPEATS_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_32112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology