Basic Information
Locus ID:
Chr04G033050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 67091303 | 67098701 | + | Chr04G033050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 420 | 703 | 1.03416E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 451 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 620 | 7.1E-6 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 6.5E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 501 | 536 | 9.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 493 | 3.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 419 | 703 | 6.87E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 384 | 556 | 2.0E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 557 | 703 | 1.9E-25 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 8.9E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 543 | 578 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 620 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 537 | 6.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 662 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 664 | 703 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 493 | 8.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 451 | 7.3E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 461 | 493 | 11.471045 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 493 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 671 | 703 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 504 | 538 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 504 | 538 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 671 | 703 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 419 | 460 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.527165 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 325 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W8K7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology