Basic Information
Locus ID:
Chr04G032630
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 66622909 | 66630475 | - | Chr04G032630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 188 | 388 | 2.9E-39 | IPR000719 |
| Pfam | PF03018 | Dirigent-like protein | 24 | 149 | 2.1E-23 | IPR004265 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 176 | 451 | 2.02E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 258 | 467 | 1.1E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 177 | 257 | 1.2E-17 | - |
| Gene3D | G3DSA:2.40.480.10 | - | 22 | 176 | 6.4E-6 | IPR044859 |
| SMART | SM00220 | serkin_6 | 185 | 460 | 2.1E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 185 | 452 | 31.269367 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 302 | 314 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 191 | 212 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_052137408.1 | U-box domain-containing protein 70-like [Oryza glaberrima] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W505 | Dirigent protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_09476 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH02.1761 |
| Poaceae | Oryza sativa | 4 | LOC_Os11g40370.2, LOC_Os11g40380.1, LOC_Os11g40400.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G142600 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G032630 |