Basic Information
Locus ID:
Chr04G030200
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin-protein ligase RHF2A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 64641914 | 64645190 | - | Chr04G030200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 26 | 53 | 2.1E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 63 | 1.51E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 77 | 1.7E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 26 | 63 | 9.273124 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22000.1 | RING-H2 group F2A. encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. | 0 |
| RefSeq | XP_022679210.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RHF2A [Setaria italica] | 0 |
| Q9ZT42 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9GR09 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0011470 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G030200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG090510 |
| Poaceae | Zea mays | 1 | Zm00001eb296960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44220, nbis-gene-45785 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2748, evm.TU.LG08.408 |