Basic Information
Locus ID:
Chr04G027010
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 60888993 | 60892140 | + | Chr04G027010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 266 | 290 | 9.5E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 310 | 333 | 1.5E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 259 | 291 | 2.35E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 305 | 336 | 5.49E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 340 | 373 | 1.2E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 302 | 339 | 2.0E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 257 | 294 | 1.8E-12 | - |
| SMART | SM00547 | zf_4 | 345 | 369 | 0.03 | IPR001876 |
| SMART | SM00547 | zf_4 | 312 | 336 | 1.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 268 | 292 | 1.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 343 | 372 | 9.009686 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 310 | 339 | 9.393621 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 266 | 295 | 9.777556 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 314 | 333 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 347 | 366 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 270 | 289 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 525 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_025797736.1 | uncharacterized protein LOC112877609 [Panicum hallii] | 0 |
| TrEMBL | A0A5J9WBQ3 | Zinc finger protein VAR3, chloroplastic (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_04898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology