Basic Information
Locus ID:
Chr04G026930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 60766392 | 60771242 | + | Chr04G026930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 6.4823E-77 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 79 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 1.7E-8 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 348 | 768 | 1.6E-125 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 276 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 7.9E-4 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 815 | 1215 | 1.0E-168 | IPR010714 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 322 | 591 | 1.77E-6 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 1.08E-74 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 1.1E-59 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 1.0E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 4.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 4.5E-11 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1213 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 276 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.996502 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 3.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 3.3E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_004982004.1 | coatomer subunit alpha-3 [Setaria italica] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0NB33 | Coatomer subunit alpha OS=Panicum virgatum OX=38727 GN=PVAP13_9KG035380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology