Basic Information
Locus ID:
Chr04G026810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 60577912 | 60582399 | + | Chr04G026810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 350 | 376 | 2.7E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 309 | 337 | 3.1E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 383 | 404 | 0.0017 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 343 | 378 | 4.71E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 303 | 338 | 5.81E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 300 | 339 | 1.5E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 379 | 411 | 2.0E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 340 | 378 | 8.7E-14 | - |
| SMART | SM00547 | zf_4 | 350 | 374 | 9.9E-8 | IPR001876 |
| SMART | SM00547 | zf_4 | 383 | 407 | 6.8E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 311 | 335 | 7.1E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 348 | 377 | 10.217952 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 309 | 338 | 9.80014 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 381 | 410 | 9.483959 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 313 | 332 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 385 | 404 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 352 | 371 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 526 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_025796160.1 | zinc finger protein VAR3, chloroplastic-like [Panicum hallii] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology