Basic Information
Locus ID:
Chr04G026060
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CPK30
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 59106179 | 59108736 | + | Chr04G026060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 88 | 346 | 5.97846E-131 | - |
| CDD | cd00051 | EFh | 466 | 528 | 7.40545E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 393 | 454 | 4.4E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 465 | 528 | 3.7E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 89 | 347 | 6.4E-70 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 371 | 540 | 1.0E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 85 | 356 | 1.35E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 91 | 174 | 1.8E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 356 | 530 | 1.1E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 175 | 355 | 2.1E-60 | - |
| SMART | SM00054 | efh_1 | 394 | 422 | 3.5E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 466 | 494 | 0.0026 | IPR002048 |
| SMART | SM00220 | serkin_6 | 89 | 347 | 1.7E-95 | IPR000719 |
| SMART | SM00054 | efh_1 | 430 | 458 | 0.045 | IPR002048 |
| SMART | SM00054 | efh_1 | 502 | 530 | 3.9E-6 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 89 | 347 | 47.481064 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 462 | 497 | 13.034948 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 426 | 461 | 10.133827 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 498 | 533 | 14.094975 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 390 | 425 | 15.461849 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 403 | 415 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 475 | 487 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 511 | 523 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 209 | 221 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 95 | 118 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 439 | 451 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74740.1 | calcium-dependent protein kinase 30. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_034570363.1 | calcium-dependent protein kinase 9-like [Setaria viridis] | 0 |
| Q6AVI8 | Calcium-dependent protein kinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4V6D0S5 | Calcium-dependent protein kinase 30 OS=Setaria viridis OX=4556 GN=SEVIR_9G134400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology