Basic Information
Locus ID:
Chr04G025350
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CDKA-1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 57870464 | 57871510 | - | Chr04G025350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 20 | 297 | 1.5E-59 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 13 | 310 | 1.89E-79 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 98 | 4.3E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 103 | 321 | 4.6E-59 | - |
| SMART | SM00220 | serkin_6 | 17 | 297 | 2.2E-79 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 17 | 297 | 42.760311 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 140 | 152 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 23 | 46 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
map04115 (p53 signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20930.1 | cyclin-dependent kinase B2;2. Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. | 0 |
| RefSeq | XP_039827059.1 | putative cyclin-dependent kinase F-2 [Panicum virgatum] | 0 |
| Q2QSL4 | Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T0MNJ2 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG181000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology