Basic Information
Locus ID:
Chr04G024920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 57152541 | 57163925 | + | Chr04G024920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 152 | 204 | 8.05417E-30 | - |
| Pfam | PF00412 | LIM domain | 152 | 206 | 2.8E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 301 | 509 | 4.8E-102 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 179 | 233 | 3.23E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 177 | 4.23E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 146 | 211 | 1.9E-12 | - |
| SMART | SM00132 | lim_4 | 151 | 203 | 1.3E-10 | IPR001781 |
| SMART | SM00726 | uim | 77 | 96 | 0.026 | IPR003903 |
| SMART | SM00726 | uim | 46 | 65 | 0.41 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 150 | 210 | 11.790999 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 10.218639 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 8.886838 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 152 | 186 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 36 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039842713.1 | protein DA1-related 1-like isoform X1 [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T0TLA5 | LIM zinc-binding domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4KG074000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology