Basic Information
Locus ID:
Chr04G024840
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 57006475 | 57016651 | - | Chr04G024840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 122 | 7.00138E-47 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 114 | 9.5E-9 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 212 | 467 | 3.4E-92 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 1.65E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 133 | 4.3E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 125 | 4.8E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 12.308835 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 491 | 90.092911 | IPR027356 |
| Coils | Coil | Coil | 539 | 566 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_034572905.1 | BTB/POZ domain-containing protein At1g30440 isoform X1 [Setaria viridis] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WCA2 | NPH3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_05469 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology