Basic Information
Locus ID:
Chr04G022610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 53407461 | 53409026 | + | Chr04G022610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 51 | 9.3297E-20 | - |
| Pfam | PF04564 | U-box domain | 9 | 75 | 1.1E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 115 | 406 | 8.86E-8 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 73 | 1.32E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 84 | 425 | 3.0E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 4.4E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 8 | 71 | 1.8E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 4 | 78 | 36.207214 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 92 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_034602614.1 | E3 ubiquitin-protein ligase PUB23-like [Setaria viridis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6SXL7 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM05G04970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology