Basic Information
Locus ID:
Chr04G020490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 50211093 | 50211581 | + | Chr04G020490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 96 | 156 | 8.34321E-6 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 70 | 2.78616E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 72 | 7.7E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 96 | 156 | 7.2E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 96 | 155 | 1.96E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 72 | 1.24E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 73 | 1.6E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 90 | 157 | 1.9E-7 | - |
| SMART | SM00213 | ubq_7 | 88 | 158 | 0.31 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 5.1E-8 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 71 | 16.102118 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 86 | 148 | 11.093776 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_044400794.1 | polyubiquitin-B-like [Triticum aestivum] | 0 |
| P0CG71 | Polyubiquitin-A OS=Caenorhabditis elegans OX=6239 GN=ubq-1 PE=3 SV=1 | 0 | |
| TrEMBL | K3ZDJ9 | Ubiquitin-like domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19980 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7261 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008759 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg18918 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5209 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006677 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23374, Sgl28490 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028976, gene:ENSEOMG00000040656 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0022740, CQ.Regalona.r1.4BG0023990 |
| Apiaceae | Apium graveolens | 2 | Ag1G01886, Ag1G01887 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696301, gene-LOC103698757 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G24114 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT4G05230.1, AT4G05240.1, AT4G05250.1, AT4G05260.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10028963m.g.v1.0, Thhalv10029386m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g02990.v2.2, Sp6g03760.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g045620.2N, BniB08g046720.2N, BniB08g046740.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07470 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g08220, gene.Thate06g12760, gene.Thate06g12770 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.559, evm.TU.LG12.562 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07421 |
| Poaceae | Echinochloa crus-galli | 8 | AH05.3213, AH06.2720, BH04.2223, BH05.3252, BH06.2521 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3BG0286330, gene-QOZ80_6AG0548350 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0081280.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047285, gene-QYE76_064734 |
| Poaceae | Oryza coarctata | 2 | Oco23G004810, Oco24G004320 |
| Poaceae | Oryza sativa | 2 | LOC_Os12g17820.1, LOC_Os12g17840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G232900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104158 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G020490, Chr06G021950, Chr10G020510, Chr11G002120 |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G904500, Tel5E01G069800, Tel5E01G751200 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG004130, gene_TRIDC5AG004140 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS3B02G611900.1.cds1, TraesCS5A02G027900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb225210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9729 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24970, Zma_g31011 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2917, evm.TU.LG09.385 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.971 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23905 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9983 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21680 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.26 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20973 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23250 |
| Salicaceae | Populus euphratica | 1 | populus_peu10253 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616154 |
| Solanaceae | Solanum chilense | 1 | SOLCI004990100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003586, gene-LOC114074902 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17841 |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G2975, TC05G2976, TC05G2978, TC05G2979 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03320.v3.1 |