Basic Information
Locus ID:
Chr04G019820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 48747276 | 48750646 | - | Chr04G019820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 247 | 377 | 2.99113E-63 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 1.89589E-122 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 4.3E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 368 | 3.4E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 390 | 1.35E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 239 | 407 | 1.8E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 238 | 3.6E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 287 | 368 | 4.9E-35 | IPR001650 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 4.3E-55 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 27.309015 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 11.13667 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 407 | 27.229755 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 181 | 189 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_004954515.1 | eukaryotic initiation factor 4A-III homolog A [Setaria italica] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | K3YSY1 | RNA helicase OS=Setaria italica OX=4555 GN=101758423 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology