Basic Information
Locus ID:
Chr04G019680
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 48585336 | 48588403 | - | Chr04G019680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 621 | 744 | 1.23728E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 623 | 752 | 1.7E-22 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 616 | 787 | 3.48E-35 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 587 | 852 | 7.6E-73 | IPR016135 |
| SMART | SM00212 | ubc_7 | 622 | 774 | 1.8E-15 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 619 | 783 | 31.746338 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 287 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 0 |
| RefSeq | XP_034586741.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 0 |
| Q8VY10 | Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana OX=3702 GN=UBC24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835BLF8 | UBC core domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_033282 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH05.3516 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr04G019680, Chr06G008110, Chr06G020560, Chr19G008590 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS2D02G051900.1, TraesCSU02G013600.1 |