Basic Information
Locus ID:
Chr04G019660
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 48580878 | 48581537 | - | Chr04G019660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 28 | 177 | 4.93991E-66 | - |
| Pfam | PF00314 | Thaumatin family | 32 | 136 | 8.8E-31 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 25 | 177 | 2.09E-49 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 26 | 177 | 3.9E-46 | IPR037176 |
| SMART | SM00205 | tha2 | 28 | 177 | 4.3E-37 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 136 | 177 | 0.071 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 152 | 7.8E-42 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 25 | 177 | 32.433029 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 81 | 96 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 118 | 134 | 5.4E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 81 | 110 | 5.4E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 69 | 80 | 5.4E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 167 | 176 | 5.4E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 47 | 56 | 5.4E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 27 | 39 | 5.4E-38 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | XP_034584886.1 | thaumatin-like protein [Setaria viridis] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WLB1 | Thaumatin-like protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00162 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology