Basic Information
Locus ID:
Chr04G019640
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
thaumatin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 48560180 | 48560790 | - | Chr04G019640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 27 | 138 | 5.0E-29 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 26 | 136 | 2.22E-39 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 26 | 178 | 6.5E-37 | IPR037176 |
| SMART | SM00205 | tha2 | 26 | 161 | 6.9E-16 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 26 | 133 | 24.113647 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 111 | 127 | 8.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 62 | 73 | 8.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 40 | 49 | 8.4E-31 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 74 | 103 | 8.4E-31 | IPR001938 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | NP_001141293.1 | Thaumatin-like pathogenesis-related protein 4 precursor [Zea mays] | 0 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EJL6 | Thaumatin-like protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G479800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology