Basic Information
Locus ID:
Chr04G019120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 47827187 | 47832855 | + | Chr04G019120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 306 | 344 | 2.66152E-6 | - |
| Pfam | PF00069 | Protein kinase domain | 424 | 690 | 2.7E-39 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 95 | 2.6E-10 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 324 | 357 | 1.97E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 413 | 695 | 3.24E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 384 | 498 | 4.3E-18 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 262 | 354 | 1.9E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 499 | 713 | 1.8E-50 | - |
| SMART | SM00220 | serkin_6 | 424 | 696 | 1.5E-29 | IPR000719 |
| SMART | SM00179 | egfca_6 | 306 | 355 | 2.1E-7 | IPR001881 |
| SMART | SM00181 | egf_5 | 256 | 305 | 43.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 309 | 355 | 3.4 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 424 | 703 | 33.233994 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 544 | 556 | - | IPR008271 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 306 | 339 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 430 | 453 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_025807083.1 | wall-associated receptor kinase 1-like [Panicum hallii] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3HFR2 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G498200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology