Basic Information
Locus ID:
Chr04G017450
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 45085271 | 45094111 | - | Chr04G017450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 267 | 309 | 1.81857E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 389 | 427 | 1.6E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 263 | 334 | 7.4E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 472 | 509 | 4.1E-6 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 358 | 642 | 3.53E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 337 | 4.89E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 357 | 474 | 5.0E-25 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 36 | 130 | 6.6E-6 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 475 | 638 | 8.8E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 336 | 3.1E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 595 | 636 | 260.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 388 | 428 | 1.7E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 429 | 469 | 0.33 | IPR000225 |
| SMART | SM00185 | arm_5 | 552 | 592 | 340.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 470 | 510 | 3.4 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 266 | 329 | 1.3E-32 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 399 | 441 | 13.0724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 262 | 336 | 43.274929 | IPR003613 |
| Coils | Coil | Coil | 135 | 155 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_039839867.1 | protein spotted leaf 11-like [Panicum virgatum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WP23 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_00955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology