Basic Information
Locus ID:
Chr04G017070
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 44370126 | 44376995 | + | Chr04G017070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 112 | 209 | 9.64389E-13 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 477 | 723 | 1.24013E-132 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 472 | 723 | 3.6E-69 | IPR001245 |
| Pfam | PF00989 | PAS fold | 100 | 206 | 2.3E-14 | IPR013767 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 98 | 209 | 2.44E-18 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 440 | 723 | 1.86E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 464 | 548 | 9.2E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 549 | 743 | 3.9E-63 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 110 | 214 | 4.3E-23 | - |
| SMART | SM00091 | pas_2 | 99 | 166 | 8.5E-9 | IPR000014 |
| SMART | SM00220 | serkin_6 | 471 | 731 | 4.1E-61 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 98 | 209 | 7.8E-13 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 471 | 732 | 44.922813 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 97 | 168 | 18.66614 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 590 | 602 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 584 | 602 | 6.8E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 631 | 641 | 6.8E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 694 | 716 | 6.8E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 545 | 558 | 6.8E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 650 | 672 | 6.8E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 319 | - | - |
| Coils | Coil | Coil | 716 | 743 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67890.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_004962762.1 | probable serine/threonine-protein kinase SIS8 isoform X2 [Setaria italica] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RB94 | PAS domain-containing protein tyrosine kinase family protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50781 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology