Basic Information
Locus ID:
Chr04G015370
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 39807523 | 39847659 | + | Chr04G015370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 41 | 161 | 4.98408E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 179 | 507 | 9.06694E-168 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 606 | 858 | 2.1E-77 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 868 | 1077 | 6.7E-55 | IPR029346 |
| Pfam | PF00917 | MATH domain | 43 | 162 | 1.1E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 181 | 502 | 1.3E-46 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 38 | 169 | 1.96E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 176 | 530 | 1.96E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 784 | 881 | 1.4E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 36 | 177 | 1.2E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 666 | 783 | 9.0E-44 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 178 | 506 | 1.3E-89 | - |
| SMART | SM00061 | math_3 | 38 | 142 | 2.8E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 36 | 161 | 37.599213 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 181 | 505 | 40.360767 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 421 | 438 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 182 | 197 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 33 | - | - |
| Coils | Coil | Coil | 514 | 541 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_002442151.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Sorghum bicolor] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0UYQ1 | ubiquitinyl hydrolase 1 OS=Panicum virgatum OX=38727 GN=PVAP13_3KG431800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology