Basic Information
Locus ID:
Chr04G011620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 17593191 | 17603586 | - | Chr04G011620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 185 | 324 | 1.28753E-31 | - |
| CDD | cd00821 | PH | 25 | 124 | 1.15308E-11 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 613 | 693 | 7.3E-19 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 185 | 329 | 1.6E-31 | IPR000198 |
| Pfam | PF00169 | PH domain | 24 | 128 | 5.7E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 20 | 136 | 3.56E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 185 | 378 | 3.53E-33 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 155 | 378 | 6.0E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 12 | 130 | 1.3E-17 | IPR011993 |
| SMART | SM00233 | PH_update | 23 | 131 | 5.0E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 182 | 373 | 3.7E-25 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 176 | 376 | 30.513508 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 22 | 129 | 15.3672 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 546 | - | - |
| Coils | Coil | Coil | 603 | 644 | - | - |
| Coils | Coil | Coil | 818 | 838 | - | - |
| Coils | Coil | Coil | 571 | 598 | - | - |
| Coils | Coil | Coil | 669 | 696 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_025794933.1 | rho GTPase-activating protein 7-like isoform X2 [Panicum hallii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3IQL7 | Rho GTPase-activating protein 7-like OS=Panicum hallii OX=206008 GN=PAHAL_9G459800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology