Basic Information
Locus ID:
Chr04G007800
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 8974829 | 8983958 | + | Chr04G007800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 301 | 343 | 1.51635E-26 | - |
| Pfam | PF04564 | U-box domain | 297 | 367 | 3.8E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 423 | 461 | 1.9E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 505 | 543 | 3.0E-9 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 395 | 668 | 1.65E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 372 | 5.3E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 386 | 508 | 2.5E-24 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 53 | 167 | 3.3E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 509 | 671 | 7.2E-27 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 370 | 9.9E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 380 | 420 | 43.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 586 | 626 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 545 | 585 | 13.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 300 | 363 | 2.3E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 463 | 503 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 422 | 462 | 6.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 504 | 544 | 0.0012 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 556 | 598 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 296 | 370 | 45.291752 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 515 | 557 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 433 | 475 | 12.0924 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_025793712.1 | protein spotted leaf 11-like [Panicum hallii] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7CEF0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G524000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology