Basic Information
Locus ID:
Chr04G007490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 8149783 | 8153745 | - | Chr04G007490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 127 | 179 | 1.35808E-23 | - |
| Pfam | PF12315 | Protein DA1 | 276 | 489 | 5.0E-99 | IPR022087 |
| Pfam | PF00412 | LIM domain | 127 | 181 | 2.4E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 153 | 207 | 1.76E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 122 | 152 | 1.9E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 122 | 186 | 3.3E-13 | - |
| SMART | SM00132 | lim_4 | 126 | 178 | 3.8E-10 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 125 | 185 | 11.493999 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 127 | 161 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 437 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_004984915.1 | protein DA1-related 2 isoform X2 [Setaria italica] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH47 | LIM zinc-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology