HalophFGD

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Basic Information
Locus ID: Chr04G006240
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description: hAT family C-terminal dimerisation region
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000004 6371039 6373101 + Chr04G006240
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF05699 hAT family C-terminal dimerisation region 8 73 1.0E-5 IPR008906
SUPERFAMILY SSF53098 Ribonuclease H-like 4 77 4.25E-15 IPR012337
MobiDBLite mobidb-lite consensus disorder prediction 168 216 - -
Gene Ontology
Molecular Function:
GO:0046983 (protein dimerization activity)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_015619223.1 uncharacterized protein LOC107279656 [Oryza sativa Japonica Group] 0
TrEMBL A0A5J9VEY6 BED-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15822 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Sporobolus alterniflorus 3 Chr04G006240, Chr04G025720, Chr07G004450
Poaceae Zea mays 1 Zm00001eb307380_P001
Poaceae Zoysia japonica 21 nbis-gene-1111, nbis-gene-13247, nbis-gene-14314 ...
nbis-gene-14531, nbis-gene-18427, nbis-gene-20806, nbis-gene-28808, nbis-gene-28852, nbis-gene-29795, nbis-gene-30435, nbis-gene-3293, nbis-gene-35914, nbis-gene-38854, nbis-gene-42305, nbis-gene-42431, nbis-gene-45646, nbis-gene-49028, nbis-gene-49408, nbis-gene-57813, nbis-gene-57868, nbis-gene-989
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.