Basic Information
Locus ID:
Chr04G005950
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 5961082 | 5971699 | + | Chr04G005950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 2.02085E-44 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 4.3E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 83 | 171 | 1.3E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 84 | 5.89E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 92 | 1.0E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.8E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 13.305813 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.861126 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.6E-31 | IPR002100 |
| Coils | Coil | Coil | 79 | 106 | - | - |
| Coils | Coil | Coil | 142 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 0 |
| RefSeq | XP_034572657.1 | MADS-box transcription factor 50 isoform X2 [Setaria viridis] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | Q9FR85 | M5 protein OS=Zea mays OX=4577 GN=mads1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology