Basic Information
Locus ID:
Chr04G005920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 5929769 | 5934180 | - | Chr04G005920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 216 | 492 | 1.29775E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 492 | 6.0E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 246 | 303 | 1.2E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 362 | 5.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 407 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 493 | 3.48E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 189 | 497 | 2.8E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 365 | 407 | 4.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 409 | 450 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 362 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 236 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 279 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 492 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 319 | 0.15 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 288 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 460 | 493 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 362 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 460 | 493 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 371 | 13.415834 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_039826334.1 | protein FIZZY-RELATED 2-like [Panicum virgatum] | 0 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WMT1 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08215 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology