Basic Information
Locus ID:
Chr04G005830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DNA polymerase phi
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 5791197 | 5792240 | - | Chr04G005830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 25 | 62 | 0.018 | IPR001680 |
| Pfam | PF04811 | Sec23/Sec24 trunk domain | 213 | 265 | 1.2E-5 | IPR006896 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1 | 209 | 2.85E-27 | IPR036322 |
| SUPERFAMILY | SSF53300 | vWA-like | 208 | 265 | 2.45E-7 | IPR036465 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 215 | 7.1E-52 | IPR015943 |
| SMART | SM00320 | WD40_4 | 22 | 63 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 69 | 125 | 8.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 175 | 0.19 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 112 | 134 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 174 | 9.739832 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 2 | 16 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 162 | 176 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 112 | 126 | 2.9E-5 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_044447948.1 | protein transport protein SEC13 homolog B-like [Triticum aestivum] | 0 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0P0VEE0 | Os02g0135800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0135800 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G014630, Chr04G005830, Chr16G011110, Chr21G012130 |