Basic Information
Locus ID:
Chr04G002440
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 2420095 | 2421230 | + | Chr04G002440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 132 | 175 | 3.92391E-18 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 182 | 2.41E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 182 | 3.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 345 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039830706.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Panicum virgatum] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0N720 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG815100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH01.4715, BH05.3232, CH01.5292, Contig181.137 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236660, gene-QOZ80_3BG0291370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406500.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_017444, gene-QYE76_034492, gene-QYE76_070258 ... |
| Poaceae | Oryza coarctata | 2 | Oco05G004950, Oco06G005070 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G454700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G002440, Chr07G008790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G507000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG056420, gene_TRIDC4BG051850 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G404600.1.cds1, TraesCS4B02G304400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb006670_P001, Zm00001eb401490_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2674 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1909 |