Basic Information
Locus ID:
Chr04G001720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 1684036 | 1686689 | - | Chr04G001720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 22 | 123 | 5.19078E-44 | - |
| Pfam | PF03000 | NPH3 family | 210 | 458 | 3.3E-88 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 26 | 117 | 1.3E-4 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 116 | 4.32E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 19 | 119 | 2.6E-11 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 96 | 9.227218 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 482 | 89.051529 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 609 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_039829525.1 | BTB/POZ domain-containing protein NPY4-like [Panicum virgatum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0N1B2 | BTB/POZ domain-containing protein NPY2 OS=Panicum virgatum OX=38727 GN=PVAP13_9NG652100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology