Basic Information
Locus ID:
Chr04G000280
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000004 | 345793 | 354875 | + | Chr04G000280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 485 | 0.0054 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 348 | 661 | 4.48E-39 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 836 | 1093 | 2.04E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 800 | 1055 | 2.9E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 546 | 682 | 1.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 313 | 539 | 1.6E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 489 | 530 | 0.044 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.8E-12 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 533 | 576 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 439 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 2.6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 950 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 495 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.865168 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 950 | 12.212779 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1132 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WID1 | TOPLESS OS=Eragrostis curvula OX=38414 GN=EJB05_07303 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology