Basic Information
Locus ID:
Chr03G023340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 60243715 | 60247081 | - | Chr03G023340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 321 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 272 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 74 | 400 | 7.48E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 399 | 5.9E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 280 | 321 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 401 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 63 | 100 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 277 | 0.0098 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 190 | 350.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_004971179.1 | autophagy-related protein 18a [Setaria italica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | K3XHQ6 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101771649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology