Basic Information
Locus ID:
Chr03G019890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
MYB3R-5
Description:
Myb-like DNA-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 56149441 | 56167813 | + | Chr03G019890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00311 | TIM | 6 | 247 | 5.71779E-116 | IPR000652 |
| Pfam | PF00121 | Triosephosphate isomerase | 7 | 246 | 7.5E-85 | IPR000652 |
| SUPERFAMILY | SSF51351 | Triosephosphate isomerase (TIM) | 3 | 247 | 1.17E-91 | IPR035990 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 257 | 8.0E-113 | IPR013785 |
| TIGRFAM | TIGR00419 | tim: triose-phosphate isomerase | 7 | 241 | 3.1E-88 | IPR000652 |
| ProSiteProfiles | PS51440 | Triosephosphate isomerase (TIM) family profile. | 5 | 248 | 80.392899 | IPR000652 |
| ProSitePatterns | PS00171 | Triosephosphate isomerase active site. | 165 | 175 | - | IPR020861 |
| Hamap | MF_00147_B | Triosephosphate isomerase [tpiA]. | 4 | 248 | 56.920647 | IPR022896 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 366 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55440.1 | triosephosphate isomerase. Encodes triosephosphate isomerase. | 0 |
| RefSeq | XP_025814412.1 | triosephosphate isomerase, cytosolic-like [Panicum hallii] | 0 |
| P21820 | Triosephosphate isomerase, cytosolic OS=Coptis japonica OX=3442 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VKX2 | Triosephosphate isomerase, cytosolic OS=Eragrostis curvula OX=38414 GN=EJB05_18730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology