Basic Information
Locus ID:
Chr03G017820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Breast carcinoma amplified sequence 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 53405210 | 53416951 | - | Chr03G017820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12490 | Breast carcinoma amplified sequence 3 | 506 | 745 | 5.6E-69 | IPR022175 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 83 | 465 | 5.09E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 502 | 7.2E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 412 | 453 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 395 | 0.0022 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03380.1 | homolog of yeast autophagy 18 (ATG18) G. | 0 |
| RefSeq | XP_039808792.1 | autophagy-related protein 18f-like [Panicum virgatum] | 0 |
| Q8GUL1 | Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VH69 | BCAS3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19400, jg24525, jg38342 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008510 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009659, gene:ENSEOMG00000027663 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0021370, CQ.Regalona.r1.4BG0022250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30157910 |
| Apiaceae | Apium graveolens | 1 | Ag9G00938 |
| Arecaceae | Cocos nucifera | 2 | scaffold001175G000020, scaffold004783G000070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696161, gene-LOC103714838 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.937.V1.1, AsparagusV1_07.3899.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G12168, Ftri2G25341 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012811m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16670.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g033320.2N, BniB05g034640.2N, BniB08g015770.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1232 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1371 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g03940, gene.Thate05g23080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031598 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G08028, Lb2G10821, Lb2G10825 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3519, BH02.3435, CH02.2978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0036130, gene-QOZ80_1BG0086130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0294310.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056034, gene-QYE76_056075 |
| Poaceae | Oryza coarctata | 2 | Oco01G022160, Oco02G022730 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57720.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G301100, gene-BS78_K023100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601671, Pt_Chr0601684 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G007660, Chr03G017820, Chr05G025890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G517300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046640, gene_TRIDC3BG053010 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G324900.2, TraesCS3B02G353900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb151200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31286 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11304 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2016, evm.TU.LG14.1200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.432, evm.TU.Scaffold_9_RagTag.300 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22028 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5313, nbisL1-mrna-5976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10396, nbisL1-mrna-7197 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.366, evm.TU.utg000006l.470 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009361, Maker00014108 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6821 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12635 |
| Salicaceae | Populus euphratica | 3 | populus_peu00382, populus_peu17420, populus_peu17421 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618914 |
| Solanaceae | Solanum chilense | 2 | SOLCI000270200, SOLCI003875700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007709, gene-LOC107026162 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24835_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2859 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31800.v3.1 |