Basic Information
Locus ID:
Chr03G017580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 53065270 | 53075688 | - | Chr03G017580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 503 | 823 | 3.23628E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1070 | 1179 | 3.41393E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1068 | 1169 | 4.1E-15 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 939 | 976 | 4.5E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 520 | 901 | 2.0E-66 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 485 | 823 | 1.38E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 938 | 983 | 9.77E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 832 | 1225 | 1.26E-52 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 932 | 989 | 1.4E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 838 | 1226 | 6.9E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 594 | 837 | 1.5E-37 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 478 | 569 | 5.3E-10 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1086 | 1169 | 1.5E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 499 | 793 | 8.0E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 939 | 977 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 518 | 785 | 11.854588 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 939 | 978 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1050 | 1222 | 14.422738 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 954 | 963 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 718 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_025814745.1 | helicase-like transcription factor CHR28 isoform X4 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NTM4 | Helicase-like transcription factor CHR28 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS20124 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology