Basic Information
Locus ID:
Chr03G015280
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000003 | 49005147 | 49011042 | + | Chr03G015280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 481 | 791 | 5.26937E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 657 | 690 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 606 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 256 | 1.22E-14 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 481 | 793 | 1.7E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 458 | 795 | 3.0E-119 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 39 | 259 | 1.0E-20 | - |
| SMART | SM00320 | WD40_4 | 524 | 563 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 513 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 566 | 606 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 690 | 5.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 754 | 793 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 2.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 692 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 247 | 9.842224 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 608 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 615 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 659 | 692 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 593 | 607 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 677 | 691 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 677 | 691 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 593 | 607 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 550 | 564 | 2.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 142 | - | - |
| Coils | Coil | Coil | 247 | 280 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_002456276.1 | protein SPA1-RELATED 4 [Sorghum bicolor] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VID6 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_17134 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology